On 6 June 2025 we will release the Q2 API changes for the VarSome API (stable-api.varsome.com).
The Stable API will update version 12.9.0 to version 13.4.0 with data frozen as of 14 May2025. This version has been successfully used in production for over a month.
The most recent version, used by VarSome itself, is always available at api.varsome.com.
Database Updates
The following databases have been updated:
|
Source |
Data Type |
Current version (Staging, Q1 '25) |
Next release (Staging, Q2 '25) |
|
AACT |
gene |
08-Nov-2024 |
07-Apr-2025 |
|
ACMG classifier |
variant |
12.8.2 |
13.4.0 |
|
AMP classifier |
variant |
12.8.2 |
13.4.0 |
|
ClinVar |
variant |
05-Dec-2024 |
07-Apr-2025 |
|
ClinVar |
region / CNV |
05-Dec-2024 |
07-Apr-2025 |
|
CPIC |
gene |
05-Dec-2024 |
07-Mar-2025 |
|
GWAS |
variant |
05-Dec-2024 |
07-Apr-2025 |
|
LOVD |
variant |
16-Dec-2024 |
14-Apr-2025 |
|
LOVD |
gene |
16-Dec-2024 |
14-Apr-2025 |
|
ClinGen |
Disease Validity |
05-Dec-2024 |
07-Apr-2025 |
|
ClinGen |
variant |
05-Dec-2024 |
07-Apr-2025 |
|
ClinGen |
gene |
05-Dec-2024 |
07-Apr-2025 |
|
ClinGen |
region / CNV |
05-Dec-2024 |
07-Apr-2025 |
|
OMIM |
gene |
16-Dec-2024 |
14-Apr-2025 |
|
OMIM |
variant |
16-Dec-2024 |
14-Apr-2025 |
|
PharmGKB |
gene |
05-Dec-2024 |
07-Apr-2025 |
|
PharmGKB |
variant |
05-Dec-2024 |
07-Apr-2025 |
|
PanelApp |
gene |
03-Jun-2024 |
17-Feb-2025 |
|
The Human Protein Atlas |
gene |
14-Mar-2024 |
07-Apr-2025 |
|
HPO |
phenotype |
06-Sep-2024 |
07-Apr-2025 |
|
DECIPHER |
region / CNV |
05-Dec-2024 |
07-Apr-2025 |
|
GenCC |
gene |
02-May-2024 |
07-Apr-2025 |
|
Known Pathogenic |
gene |
07-Feb-2025 |
13-May-2025 |
|
Known Pathogenic |
variant |
07-Feb-2025 |
13-May-2025 |
|
HGNC |
gene |
03-Jun-2024 |
13-Feb-2025 |
|
Ensembl |
transcript |
112 |
113 |
|
RefSeq |
transcript |
224 |
228 |
|
Uniprot Variants |
variant |
05-Dec-2024 |
07-Feb-2025 |
|
Uniprot Regions |
Region/ CNV |
04-Oct-2024 |
07-Feb-2025 |
|
Mondo |
phenotype |
21-Mar-2024 |
07-Feb-2025 |
|
CGD |
gene |
03-Jul-2024 |
07-Mar-2025 |
|
GTEx |
gene |
v8 |
v10 |
|
GHR |
gene |
05-Dec-2024 |
07-Apr-2025 |
|
PharmGKB |
variant |
05-Dec-2024 |
07-Apr-2025 |
|
Cosmic |
variant |
v100 |
v101 |
|
CGC |
gene |
v100 |
v101 |
JSON Schema Changes
Variants
API Request
No changes.
Genes
No changes.
CNVs
No changes.
Reminder: all the data structures returned by the VarSome API are documented:
For variants here.
For genes here.
For CNVs here.
Please contact us if you need any further assistance with this release.
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