On 8th March 2024 we will be releasing the Q1 API changes for the VarSome API (stable-api.varsome.com).
The Stable API will update version 11.8.5 to version 11.10 with data frozen as of the 2nd February 2024. This version has been successfully used in production for over a month.
The most recent version, used by VarSome itself, is always available at api.varsome.com.
Database Updates
The following databases have been updated:
|
Source |
Data Type |
Current (Stable, Q4 '23) |
Next Release (Staging, Q1 '24) |
|
AACT Clinical Trials |
gene |
06-Oct-2023 |
05-Jan-2024 |
|
ACMG classifier |
variant |
11.8.4 |
11.10 |
|
AMP classifier |
variant |
11.8.4 |
11.10 |
|
CGD |
gene |
05-May-2023 |
15-Jan-2024 |
|
CIViC |
variant |
07-Aug-2023 |
08-Dec-2023 |
|
CIViC |
gene |
07-Aug-2023 |
08-Dec-2023 |
|
ClinVar |
variant |
06-Oct-2023 |
15-Jan-2024 |
|
ClinVar |
region / CNV |
06-Oct-2023 |
08-Dec-2023 |
|
CPIC |
gene |
07-Aug-2023 |
05-Jan-2024 |
|
dbNSFP |
variant |
4.3 |
4.5 |
|
dbNSFP |
gene |
4.3 |
4.5 |
|
dbSNP |
variant |
build 154 |
build 156 |
|
DGI |
gene |
06-Oct-2023 |
10-Nov-2023 |
|
Genomic England PanelAPP |
gene |
06-Oct-2023 |
10-Nov-2023 |
|
GDC |
variant |
08-Sep-2023 |
08-Dec-2023 |
|
gnomAD exomes (hg38) |
variant |
N/A |
4.0 |
|
gnomAD genomes (hg38) |
variant |
3.1.2 |
4.0 |
|
GWAS |
variant |
08-Sep-2023 |
08-Dec-2023 |
|
HGNC |
gene |
15-Oct-2023 |
12-Dec-2023 |
|
LUMC LOVD |
variant |
21-Aug-2023 |
15-Jan-2024 |
|
Mitomap |
variant |
11-Jul-2023 |
08-Dec-2023 |
|
NIH ClinGen |
variant |
20-Oct-2023 |
15-Jan-2024 |
|
NIH ClinGen |
gene |
07-Jun-2022 |
19-Dec-2023 |
|
NIH ClinGen |
region / CNV |
07-Jun-2022 |
19-Dec-2023 |
|
OMIM |
gene |
06-Oct-2023 |
04-Jan-2024 |
|
OMIM |
variant |
06-Oct-2023 |
04-Jan-2024 |
|
PharmGKB |
gene |
06-Oct-2023 |
15-Jan-2024 |
|
PharmGKB |
variant |
06-Oct-2023 |
15-Jan-2024 |
|
PMKB |
variant |
21-Sep-2022 |
15-Jan-2024 |
|
The Human Protein Atlas |
gene |
07-Sep-2021 |
05-Jan-2024 |
|
RefSeq |
transcript |
210 |
221 |
|
Sanger DECIPHER |
region / CNV |
21-Aug-2023 |
08-Dec-2023 |
|
Saphetor Known Pathogenic |
gene |
03-Nov-2023 |
02-Jan-2024 |
|
Saphetor Known Pathogenic |
variant |
03-Nov-2023 |
02-Jan-2024 |
|
Pubmed |
variant |
03-Nov-2023 |
02-Jan-2024 |
|
UniProt Regions |
regions |
06-Oct-2023 |
08-Dec-2023 |
JSON Schema Changes
No changes in the data schema are included in this release
Reminder: all the data structures returned by the VarSome API are documented here.
Please contact us if you need any further assistance with this release.
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