On 8th December 2023 we will be releasing the Q4 API changes for the VarSome API (stable-api.varsome.com).
The Stable API will update version 11.8.0 to version 11.8.5 with data frozen as of the 3rd November 2023. This version has been successfully used in production for over a month.
The most recent version, used by VarSome itself, is always available at api.varsome.com.
Database Updates
The following databases have been updated:
|
Source |
Data Type |
Current (Stable, Q3 '23) |
Next Release (Staging, Q4 '23) |
Comment |
|
AACT Clinical Trials |
gene |
13-Jun-2023 |
06-Oct-2023 |
|
|
ACMG classifier |
variant |
11.8.0 |
11.8.4 |
|
|
AMP classifier |
variant |
11.8.0 |
11.8.4 |
|
|
ClinVar |
variant |
31-Jul-2023 |
06-Oct-2023 |
|
|
ClinVar |
region / CNV |
31-Jul-2023 |
06-Oct-2023 |
|
|
CPIC |
gene |
06-Jun-2023 |
07-Aug-2023 |
|
|
DGI |
gene |
12-Jul-2023 |
06-Oct-2023 |
|
|
Ensembl |
transcripts |
108 |
110 |
|
|
Genomic England PanelAPP |
gene |
11-Jul-2023 |
06-Oct-2023 |
|
|
GWAS |
variant |
11-Jul-2023 |
08-Sep-2023 |
|
|
HGNC |
gene |
30-Nov-2022 |
15-Oct-2023 |
|
|
LUMC LOVD |
variant |
31-Jul-2023 |
21-Aug-2023 |
|
|
NIH ClinGen |
variant |
20-Jun-2023 |
20-Oct-2023 |
|
|
OMIM |
gene |
17-Jul-2023 |
06-Oct-2023 |
|
|
OMIM |
variant |
17-Jul-2023 |
06-Oct-2023 |
|
|
PharmGKB |
gene |
12-Jul-2023 |
06-Oct-2023 |
|
|
PharmGKB |
variant |
12-Jul-2023 |
06-Oct-2023 |
|
|
Sanger DECIPHER |
region / CNV |
10-Jul-2023 |
21-Aug-2023 |
|
|
Saphetor Known Pathogenic |
gene |
01-Aug-2023 |
03-Nov-2023 |
All clinical classifications from all sources. |
|
Saphetor Known Pathogenic |
variant |
01-Aug-2023 |
03-Nov-2023 |
All clinical classifications from all sources. |
|
Pubmed |
variant |
02-Aug-2023 |
03-Nov-2023 |
|
|
UniProt Regions |
regions |
20-Jun-2022 |
06-Oct-2023 |
JSON Schema Changes
No changes in the data schema are included in this release
Reminder: all the data structures returned by the VarSome API are documented here.
Please contact us if you need any further assistance with this release.
Further Information and Support
An overview of the VarSome API is available here with more detailed information here.
Please contact us at the usual address support@varsome.com should you require any additional information or run into any major issues. As ever we look forward to your feedback and suggestions to improve our platform.
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